# DREME 5.3.0 # command: dreme -oc T3-Cs.m6A -rna -p T3-Cs.m6A.fa -t 1800 -e 0.05 -png -norc -mink 5 # positives: 3574 from T3-Cs.m6A.fa (Thu Sep 23 17:06:03 CST 2021) # negatives: 3574 from shuffled positives # host: ecs-f11d # when: Thu Sep 23 17:06:18 CST 2021 MEME version 5.3.0 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.250 C 0.254 G 0.245 U 0.251 MOTIF UYGAUCCU DREME-1 # Word Pos Neg P-value E-value # BEST UYGAUCCU 815 82 1.3e-171 1.2e-166 # UCGAUCCU 552 34 9.2e-131 8.1e-126 # UUGAUCCU 407 49 9.5e-076 8.3e-071 letter-probability matrix: alength= 4 w= 8 nsites= 999 E= 1.2e-166 0.000000 0.000000 0.000000 1.000000 0.000000 0.590591 0.000000 0.409409 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AGGAUCRA DREME-2 # Word Pos Neg P-value E-value # BEST AGGAUCRA 851 101 1.6e-168 1.4e-163 # AGGAUCGA 637 52 8.8e-141 7.7e-136 # AGGAUCAA 432 50 5.4e-082 4.8e-077 letter-probability matrix: alength= 4 w= 8 nsites= 1156 E= 1.4e-163 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.376298 0.000000 0.623702 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGACGUCK DREME-3 # Word Pos Neg P-value E-value # BEST CGACGUCK 744 65 4.5e-163 4.0e-158 # CGACGUCG 504 34 5.5e-116 4.8e-111 # CGACGUCU 335 32 4.8e-068 4.2e-063 letter-probability matrix: alength= 4 w= 8 nsites= 964 E= 4.0e-158 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.558091 0.441909 MOTIF DUCAAAGU DREME-4 # Word Pos Neg P-value E-value # BEST DUCAAAGU 839 128 8.3e-147 7.3e-142 # UUCAAAGU 531 51 1.2e-109 1.0e-104 # AUCAAAGU 198 36 2.0e-029 1.8e-024 # GUCAAAGU 115 42 1.7e-009 1.4e-004 letter-probability matrix: alength= 4 w= 8 nsites= 945 E= 7.3e-142 0.210582 0.000000 0.121693 0.667725 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF UUACHAGG DREME-5 # Word Pos Neg P-value E-value # BEST UUACHAGG 734 82 1.2e-146 1.0e-141 # UUACUAGG 362 21 2.0e-085 1.8e-080 # UUACAAGG 234 33 4.6e-040 4.0e-035 # UUACCAGG 164 30 2.0e-024 1.8e-019 letter-probability matrix: alength= 4 w= 8 nsites= 778 E= 1.0e-141 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.302057 0.210797 0.000000 0.487147 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF YACCACCA DREME-6 # Word Pos Neg P-value E-value # BEST YACCACCA 675 59 1.3e-146 1.2e-141 # CACCACCA 494 40 1.2e-107 1.0e-102 # UACCACCA 189 21 3.7e-036 3.2e-031 letter-probability matrix: alength= 4 w= 8 nsites= 843 E= 1.2e-141 0.000000 0.775801 0.000000 0.224199 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF USGUGGUG DREME-7 # Word Pos Neg P-value E-value # BEST USGUGGUG 661 55 1.2e-145 1.1e-140 # UGGUGGUG 480 31 1.8e-111 1.6e-106 # UCGUGGUG 196 24 5.8e-036 5.1e-031 letter-probability matrix: alength= 4 w= 8 nsites= 756 E= 1.1e-140 0.000000 0.000000 0.000000 1.000000 0.000000 0.268519 0.731481 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CKCGUUGA DREME-8 # Word Pos Neg P-value E-value # BEST CKCGUUGA 690 75 1.4e-138 1.2e-133 # CUCGUUGA 539 35 8.8e-126 7.6e-121 # CGCGUUGA 153 42 1.0e-016 9.0e-012 letter-probability matrix: alength= 4 w= 8 nsites= 965 E= 1.2e-133 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.158549 0.841451 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGCGCGCR DREME-9 # Word Pos Neg P-value E-value # BEST AGCGCGCR 656 79 1.3e-125 1.2e-120 # AGCGCGCG 443 52 1.2e-083 1.0e-078 # AGCGCGCA 234 30 5.7e-042 5.0e-037 letter-probability matrix: alength= 4 w= 8 nsites= 725 E= 1.2e-120 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.322759 0.000000 0.677241 0.000000 MOTIF CGCGMGCU DREME-10 # Word Pos Neg P-value E-value # BEST CGCGMGCU 656 83 7.9e-123 6.9e-118 # CGCGCGCU 453 50 6.8e-088 5.9e-083 # CGCGAGCU 223 33 2.9e-037 2.6e-032 letter-probability matrix: alength= 4 w= 8 nsites= 779 E= 6.9e-118 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.286264 0.713736 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF UWGGCGGA DREME-11 # Word Pos Neg P-value E-value # BEST UWGGCGGA 604 64 3.3e-121 2.9e-116 # UUGGCGGA 392 38 1.5e-079 1.3e-074 # UAGGCGGA 223 26 9.7e-042 8.5e-037 letter-probability matrix: alength= 4 w= 8 nsites= 615 E= 2.9e-116 0.000000 0.000000 0.000000 1.000000 0.362602 0.000000 0.000000 0.637398 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGUUAACK DREME-12 # Word Pos Neg P-value E-value # BEST CGUUAACK 553 45 4.1e-121 3.5e-116 # CGUUAACG 392 23 1.8e-092 1.5e-087 # CGUUAACU 174 23 6.7e-031 5.9e-026 letter-probability matrix: alength= 4 w= 8 nsites= 566 E= 3.5e-116 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.692580 0.307420 MOTIF CAUSGCCG DREME-13 # Word Pos Neg P-value E-value # BEST CAUSGCCG 603 64 6.5e-121 5.7e-116 # CAUCGCCG 447 42 3.3e-092 2.8e-087 # CAUGGCCG 157 23 1.4e-026 1.2e-021 letter-probability matrix: alength= 4 w= 8 nsites= 622 E= 5.7e-116 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.744373 0.255627 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AUCGSUCC DREME-14 # Word Pos Neg P-value E-value # BEST AUCGSUCC 630 77 2.0e-119 1.7e-114 # AUCGGUCC 394 42 4.2e-077 3.7e-072 # AUCGCUCC 252 37 3.0e-042 2.6e-037 letter-probability matrix: alength= 4 w= 8 nsites= 646 E= 1.7e-114 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.390093 0.609907 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF UUCGUMUU DREME-15 # Word Pos Neg P-value E-value # BEST UUCGUMUU 640 81 1.4e-119 1.3e-114 # UUCGUAUU 344 32 1.4e-070 1.2e-065 # UUCGUCUU 298 50 2.2e-046 2.0e-041 letter-probability matrix: alength= 4 w= 8 nsites= 647 E= 1.3e-114 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.531685 0.468315 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF UGURUACA DREME-16 # Word Pos Neg P-value E-value # BEST UGURUACA 493 27 2.4e-119 2.1e-114 # UGUAUACA 440 18 2.1e-112 1.8e-107 # UGUGUACA 221 9 1.0e-055 8.8e-051 letter-probability matrix: alength= 4 w= 8 nsites= 661 E= 2.1e-114 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.665658 0.000000 0.334342 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCKUAGGC DREME-17 # Word Pos Neg P-value E-value # BEST GCKUAGGC 590 61 2.5e-119 2.1e-114 # GCGUAGGC 439 33 2.5e-097 2.2e-092 # GCUUAGGC 153 30 7.8e-022 6.8e-017 letter-probability matrix: alength= 4 w= 8 nsites= 603 E= 2.1e-114 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.746269 0.253731 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RGAGCUCU DREME-18 # Word Pos Neg P-value E-value # BEST RGAGCUCU 602 67 2.1e-118 1.9e-113 # AGAGCUCU 424 32 9.3e-094 8.1e-089 # GGAGCUCU 183 35 2.3e-026 2.0e-021 letter-probability matrix: alength= 4 w= 8 nsites= 608 E= 1.9e-113 0.699013 0.000000 0.300987 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ACGRGCUU DREME-19 # Word Pos Neg P-value E-value # BEST ACGRGCUU 592 64 1.1e-117 9.8e-113 # ACGAGCUU 400 31 1.5e-087 1.3e-082 # ACGGGCUU 272 34 2.3e-049 2.0e-044 letter-probability matrix: alength= 4 w= 8 nsites= 674 E= 9.8e-113 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.596439 0.000000 0.403561 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GACSAACA DREME-20 # Word Pos Neg P-value E-value # BEST GACSAACA 567 58 7.7e-115 6.7e-110 # GACCAACA 386 32 1.3e-082 1.1e-077 # GACGAACA 182 26 4.5e-031 3.9e-026 letter-probability matrix: alength= 4 w= 8 nsites= 577 E= 6.7e-110 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.684575 0.315425 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CMACAUCC DREME-21 # Word Pos Neg P-value E-value # BEST CMACAUCC 619 82 7.2e-113 6.3e-108 # CCACAUCC 387 40 1.3e-076 1.1e-071 # CAACAUCC 244 44 2.6e-036 2.2e-031 letter-probability matrix: alength= 4 w= 8 nsites= 633 E= 6.3e-108 0.000000 1.000000 0.000000 0.000000 0.387046 0.612954 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CUACSUCC DREME-22 # Word Pos Neg P-value E-value # BEST CUACSUCC 541 51 1.3e-112 1.2e-107 # CUACCUCC 386 32 1.3e-082 1.1e-077 # CUACGUCC 155 20 6.3e-028 5.5e-023 letter-probability matrix: alength= 4 w= 8 nsites= 547 E= 1.2e-107 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.716636 0.283364 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACUUUGA DREME-23 # Word Pos Neg P-value E-value # BEST ACUUUGA 825 185 8.7e-112 7.6e-107 # ACUUUGA 825 185 8.7e-112 7.6e-107 letter-probability matrix: alength= 4 w= 7 nsites= 878 E= 7.6e-107 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AUGASUAC DREME-24 # Word Pos Neg P-value E-value # BEST AUGASUAC 493 41 1.6e-106 1.4e-101 # AUGAGUAC 365 11 3.0e-097 2.6e-092 # AUGACUAC 133 30 2.6e-017 2.3e-012 letter-probability matrix: alength= 4 w= 8 nsites= 498 E= 1.4e-101 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.267068 0.732932 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF SUACUCAU DREME-25 # Word Pos Neg P-value E-value # BEST SUACUCAU 533 55 3.7e-107 3.2e-102 # GUACUCAU 342 24 1.0e-076 9.1e-072 # CUACUCAU 198 31 3.8e-032 3.3e-027 letter-probability matrix: alength= 4 w= 8 nsites= 540 E= 3.2e-102 0.000000 0.366667 0.633333 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 # Stopping reason: maximum running time reached # Running time: 1799.05 seconds