# DREME 5.3.0 # command: dreme -oc T1-Cs.m5C -rna -p T1-Cs.m5C.fa -t 1800 -e 0.05 -png -norc -mink 5 # positives: 6294 from T1-Cs.m5C.fa (Thu Sep 23 17:06:03 CST 2021) # negatives: 6294 from shuffled positives # host: ecs-f11d # when: Thu Sep 23 17:06:36 CST 2021 MEME version 5.3.0 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.234 C 0.268 G 0.262 U 0.236 MOTIF AGGAUCRA DREME-1 # Word Pos Neg P-value E-value # BEST AGGAUCRA 984 112 2.3e-189 2.0e-184 # AGGAUCGA 738 58 7.3e-160 6.4e-155 # AGGAUCAA 470 55 1.4e-086 1.2e-081 letter-probability matrix: alength= 4 w= 8 nsites= 1312 E= 2.0e-184 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.365091 0.000000 0.634909 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF UCGHAGUU DREME-2 # Word Pos Neg P-value E-value # BEST UCGHAGUU 1070 182 1.0e-168 9.1e-164 # UCGAAGUU 556 81 1.9e-092 1.7e-087 # UCGCAGUU 328 67 6.5e-044 5.7e-039 # UCGUAGUU 221 38 1.9e-033 1.6e-028 letter-probability matrix: alength= 4 w= 8 nsites= 2145 E= 9.1e-164 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.682517 0.213986 0.000000 0.103497 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF UYGAUCCU DREME-3 # Word Pos Neg P-value E-value # BEST UYGAUCCU 915 119 6.3e-165 5.6e-160 # UCGAUCCU 637 64 5.8e-126 5.1e-121 # UUGAUCCU 435 55 2.9e-077 2.5e-072 letter-probability matrix: alength= 4 w= 8 nsites= 1129 E= 5.6e-160 0.000000 0.000000 0.000000 1.000000 0.000000 0.611160 0.000000 0.388840 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AACUDCGA DREME-4 # Word Pos Neg P-value E-value # BEST AACUDCGA 962 161 7.3e-152 6.4e-147 # AACUUCGA 497 79 1.6e-078 1.4e-073 # AACUACGA 248 38 5.1e-040 4.5e-035 # AACUGCGA 242 49 8.4e-033 7.4e-028 letter-probability matrix: alength= 4 w= 8 nsites= 2303 E= 6.4e-147 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.108120 0.000000 0.143726 0.748155 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF UAGGCCA DREME-5 # Word Pos Neg P-value E-value # BEST UAGGCCA 948 159 2.7e-149 2.4e-144 # UAGGCCA 948 159 2.7e-149 2.4e-144 letter-probability matrix: alength= 4 w= 7 nsites= 2073 E= 2.4e-144 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GACGUCKC DREME-6 # Word Pos Neg P-value E-value # BEST GACGUCKC 956 170 3.0e-145 2.6e-140 # GACGUCGC 621 87 9.2e-106 8.1e-101 # GACGUCUC 372 87 9.1e-045 8.0e-040 letter-probability matrix: alength= 4 w= 8 nsites= 1241 E= 2.6e-140 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.615633 0.384367 0.000000 1.000000 0.000000 0.000000 MOTIF CGAKGCCU DREME-7 # Word Pos Neg P-value E-value # BEST CGAKGCCU 853 125 4.7e-144 4.1e-139 # CGAGGCCU 519 69 2.8e-090 2.4e-085 # CGAUGCCU 341 58 1.4e-051 1.2e-046 letter-probability matrix: alength= 4 w= 8 nsites= 2754 E= 4.1e-139 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.875091 0.124909 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CCGUHCCA DREME-8 # Word Pos Neg P-value E-value # BEST CCGUHCCA 1025 207 1.4e-143 1.2e-138 # CCGUUCCA 625 89 1.4e-105 1.3e-100 # CCGUACCA 210 39 2.5e-030 2.2e-025 # CCGUCCCA 285 90 1.1e-025 9.4e-021 letter-probability matrix: alength= 4 w= 8 nsites= 2939 E= 1.2e-138 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.072133 0.372916 0.000000 0.554951 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF UUCUKAGU DREME-9 # Word Pos Neg P-value E-value # BEST UUCUKAGU 818 116 3.3e-140 2.9e-135 # UUCUGAGU 598 58 1.4e-119 1.2e-114 # UUCUUAGU 241 61 2.5e-027 2.1e-022 letter-probability matrix: alength= 4 w= 8 nsites= 1515 E= 2.9e-135 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.838284 0.161716 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ACCACCVA DREME-10 # Word Pos Neg P-value E-value # BEST ACCACCVA 985 197 1.7e-138 1.5e-133 # ACCACCCA 555 73 3.2e-097 2.8e-092 # ACCACCGA 283 57 2.3e-038 2.0e-033 # ACCACCAA 267 74 1.0e-027 9.1e-023 letter-probability matrix: alength= 4 w= 8 nsites= 2266 E= 1.5e-133 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.120918 0.741836 0.137246 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACUMAGAA DREME-11 # Word Pos Neg P-value E-value # BEST ACUMAGAA 808 120 4.9e-135 4.3e-130 # ACUCAGAA 508 67 1.1e-088 9.9e-084 # ACUAAGAA 324 53 3.4e-050 3.0e-045 letter-probability matrix: alength= 4 w= 8 nsites= 1680 E= 4.3e-130 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.196429 0.803571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF UGGCCUA DREME-12 # Word Pos Neg P-value E-value # BEST UGGCCUA 882 155 3.0e-134 2.6e-129 # UGGCCUA 882 155 3.0e-134 2.6e-129 letter-probability matrix: alength= 4 w= 7 nsites= 1798 E= 2.6e-129 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF SACCAMCA DREME-13 # Word Pos Neg P-value E-value # BEST SACCAMCA 984 209 2.7e-132 2.3e-127 # CACCACCA 415 50 2.5e-075 2.2e-070 # GACCAACA 450 67 1.3e-073 1.1e-068 # CACCAACA 321 65 2.9e-043 2.5e-038 # GACCACCA 90 39 3.7e-006 3.3e-001 letter-probability matrix: alength= 4 w= 8 nsites= 1369 E= 2.3e-127 0.000000 0.568298 0.431702 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.590212 0.409788 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGUGGUSC DREME-14 # Word Pos Neg P-value E-value # BEST GGUGGUSC 866 158 1.7e-128 1.5e-123 # GGUGGUGC 589 82 1.8e-100 1.6e-095 # GGUGGUCC 282 77 1.2e-029 1.1e-024 letter-probability matrix: alength= 4 w= 8 nsites= 1790 E= 1.5e-123 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.632402 0.367598 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF URGRACGG DREME-15 # Word Pos Neg P-value E-value # BEST URGRACGG 1204 241 2.2e-172 1.9e-167 # UGGAACGG 506 71 1.3e-085 1.1e-080 # UAGGACGG 391 41 3.1e-075 2.8e-070 # UGGGACGG 312 87 4.9e-032 4.2e-027 # UAGAACGG 83 54 7.9e-003 6.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 3271 E= 1.9e-167 0.000000 0.000000 0.000000 1.000000 0.195965 0.000000 0.804035 0.000000 0.000000 0.000000 1.000000 0.000000 0.452155 0.000000 0.547845 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GUSGGCA DREME-16 # Word Pos Neg P-value E-value # BEST GUSGGCA 1378 446 3.2e-128 2.8e-123 # GUGGGCA 801 219 4.2e-085 3.6e-080 # GUCGGCA 657 251 5.8e-046 5.0e-041 letter-probability matrix: alength= 4 w= 7 nsites= 2908 E= 2.8e-123 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.233494 0.766506 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: maximum running time reached # Running time: 1799.40 seconds