# DREME 5.3.0 # command: dreme -oc C3-Cs.m6A -rna -p C3-Cs.m6A.fa -t 1800 -e 0.05 -png -norc -mink 5 # positives: 14730 from C3-Cs.m6A.fa (Thu Sep 23 17:06:03 CST 2021) # negatives: 14730 from shuffled positives # host: ecs-f11d # when: Thu Sep 23 17:06:32 CST 2021 MEME version 5.3.0 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.291 C 0.208 G 0.208 U 0.292 MOTIF YUUCUUCY DREME-1 # Word Pos Neg P-value E-value # BEST YUUCUUCY 4792 2128 1.5e-299 1.4e-294 # CUUCUUCU 1699 510 3.9e-160 3.5e-155 # CUUCUUCC 1222 408 1.0e-099 9.2e-095 # UUUCUUCU 1689 783 1.2e-082 1.1e-077 # UUUCUUCC 893 550 9.0e-021 8.2e-016 letter-probability matrix: alength= 4 w= 8 nsites= 6206 E= 1.4e-294 0.000000 0.518047 0.000000 0.481953 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.326136 0.000000 0.673864 MOTIF GAAGVAR DREME-2 # Word Pos Neg P-value E-value # BEST GAAGVAR 9065 6052 3.1e-272 2.8e-267 # GAAGAAG 3205 1369 1.9e-196 1.7e-191 # GAAGAAA 3365 2028 3.6e-091 3.3e-086 # GAAGGAG 1639 988 5.8e-041 5.3e-036 # GAAGGAA 2083 1383 3.9e-037 3.6e-032 # GAAGCAG 1197 671 7.1e-037 6.5e-032 # GAAGCAA 1343 980 2.3e-015 2.1e-010 letter-probability matrix: alength= 4 w= 7 nsites= 15900 E= 2.8e-267 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.565220 0.164843 0.269937 0.000000 1.000000 0.000000 0.000000 0.000000 0.492579 0.000000 0.507421 0.000000 MOTIF AUAUAUAB DREME-3 # Word Pos Neg P-value E-value # BEST AUAUAUAB 1656 330 4.5e-226 4.1e-221 # AUAUAUAU 1004 148 1.2e-162 1.1e-157 # AUAUAUAC 342 73 1.5e-043 1.4e-038 # AUAUAUAG 366 111 1.3e-033 1.2e-028 letter-probability matrix: alength= 4 w= 8 nsites= 1946 E= 4.1e-221 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.136691 0.156218 0.707091 MOTIF CGNCGNCG DREME-4 # Word Pos Neg P-value E-value # BEST CGNCGNCG 2427 604 1.0e-284 9.5e-280 # CGCCGCCG 403 49 1.6e-071 1.4e-066 # CGACGUCG 356 34 7.1e-070 6.5e-065 # CGUCGUCG 398 53 1.2e-067 1.1e-062 # CGGCGGCG 357 48 1.7e-060 1.6e-055 # CGACGACG 343 48 5.5e-057 5.0e-052 # CGUCGACG 330 45 1.4e-055 1.2e-050 # CGGCGACG 278 56 3.5e-037 3.2e-032 # CGCCGUCG 222 45 7.9e-030 7.2e-025 # CGUCGCCG 245 60 3.1e-028 2.8e-023 # CGUCGGCG 205 45 4.5e-026 4.1e-021 # CGACGGCG 197 45 2.4e-024 2.2e-019 # CGCCGACG 156 48 6.5e-015 6.0e-010 # CGCCGGCG 168 64 2.5e-012 2.3e-007 # CGGCGCCG 145 52 1.0e-011 9.3e-007 # CGACGCCG 154 60 4.4e-011 4.0e-006 # CGGCGUCG 115 41 1.2e-009 1.1e-004 letter-probability matrix: alength= 4 w= 8 nsites= 3914 E= 9.5e-280 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.259070 0.235820 0.214614 0.290496 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.235820 0.229433 0.231221 0.303526 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CWUCYUC DREME-5 # Word Pos Neg P-value E-value # BEST CWUCYUC 5279 3021 6.2e-190 5.7e-185 # CUUCCUC 1942 937 2.6e-088 2.4e-083 # CUUCUUC 1283 593 2.5e-062 2.2e-057 # CAUCUUC 1816 999 7.2e-060 6.5e-055 # CAUCCUC 1128 753 1.9e-019 1.8e-014 letter-probability matrix: alength= 4 w= 7 nsites= 7145 E= 5.7e-185 0.000000 1.000000 0.000000 0.000000 0.482855 0.000000 0.000000 0.517145 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.506088 0.000000 0.493912 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF UGGUGGH DREME-6 # Word Pos Neg P-value E-value # BEST UGGUGGH 3128 1374 1.5e-181 1.4e-176 # UGGUGGA 1451 611 2.6e-084 2.4e-079 # UGGUGGU 1227 465 5.4e-084 4.9e-079 # UGGUGGC 690 342 6.3e-029 5.7e-024 letter-probability matrix: alength= 4 w= 7 nsites= 3883 E= 1.4e-176 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.417718 0.177955 0.000000 0.404327 # Stopping reason: maximum running time reached # Running time: 1799.35 seconds