# DREME 5.3.0 # command: dreme -oc C1-Cs.m5C -rna -p C1-Cs.m5C.fa -t 1800 -e 0.05 -png -norc -mink 5 # positives: 4556 from C1-Cs.m5C.fa (Thu Sep 23 17:06:03 CST 2021) # negatives: 4556 from shuffled positives # host: ecs-f11d # when: Thu Sep 23 17:06:59 CST 2021 MEME version 5.3.0 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.259 C 0.242 G 0.239 U 0.260 MOTIF CGAKGCCU DREME-1 # Word Pos Neg P-value E-value # BEST CGAKGCCU 835 161 1.0e-122 8.9e-118 # CGAGGCCU 525 103 6.9e-074 6.1e-069 # CGAUGCCU 316 63 1.6e-043 1.4e-038 letter-probability matrix: alength= 4 w= 8 nsites= 3762 E= 8.9e-118 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.915205 0.084795 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AGGAUCRA DREME-2 # Word Pos Neg P-value E-value # BEST AGGAUCRA 889 216 5.9e-110 5.2e-105 # AGGAUCGA 604 82 1.8e-106 1.6e-101 # AGGAUCAA 518 140 7.6e-056 6.7e-051 letter-probability matrix: alength= 4 w= 8 nsites= 1341 E= 5.2e-105 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.427293 0.000000 0.572707 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGAMUCGG DREME-3 # Word Pos Neg P-value E-value # BEST AGAMUCGG 890 196 2.1e-119 1.8e-114 # AGACUCGG 439 91 5.1e-059 4.5e-054 # AGAAUCGG 462 112 7.5e-055 6.6e-050 letter-probability matrix: alength= 4 w= 8 nsites= 4387 E= 1.8e-114 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.517894 0.482106 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF UGGCCUA DREME-4 # Word Pos Neg P-value E-value # BEST UGGCCUA 850 200 1.5e-107 1.3e-102 # UGGCCUA 850 200 1.5e-107 1.3e-102 letter-probability matrix: alength= 4 w= 7 nsites= 2769 E= 1.3e-102 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGUGGUSC DREME-5 # Word Pos Neg P-value E-value # BEST GGUGGUSC 778 163 5.0e-107 4.4e-102 # GGUGGUGC 494 84 3.5e-076 3.0e-071 # GGUGGUCC 296 81 2.5e-031 2.2e-026 letter-probability matrix: alength= 4 w= 8 nsites= 2343 E= 4.4e-102 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.739223 0.260777 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACCHAGUA DREME-6 # Word Pos Neg P-value E-value # BEST ACCHAGUA 728 139 1.9e-106 1.7e-101 # ACCCAGUA 394 57 3.4e-066 3.0e-061 # ACCAAGUA 230 54 4.3e-028 3.8e-023 # ACCUAGUA 172 30 3.4e-026 3.0e-021 letter-probability matrix: alength= 4 w= 8 nsites= 2923 E= 1.7e-101 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083818 0.840575 0.000000 0.075607 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGACGUCK DREME-7 # Word Pos Neg P-value E-value # BEST CGACGUCK 810 186 4.4e-104 3.8e-099 # CGACGUCG 627 114 9.3e-094 8.2e-089 # CGACGUCU 361 77 2.4e-047 2.1e-042 letter-probability matrix: alength= 4 w= 8 nsites= 1342 E= 3.8e-099 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.620715 0.379285 MOTIF UYGAUCCU DREME-8 # Word Pos Neg P-value E-value # BEST UYGAUCCU 880 225 7.1e-104 6.2e-099 # UCGAUCCU 553 105 8.5e-080 7.5e-075 # UUGAUCCU 509 127 4.2e-059 3.7e-054 letter-probability matrix: alength= 4 w= 8 nsites= 1198 E= 6.2e-099 0.000000 0.000000 0.000000 1.000000 0.000000 0.536728 0.000000 0.463272 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GMACGGUG DREME-9 # Word Pos Neg P-value E-value # BEST GMACGGUG 776 169 1.3e-103 1.1e-098 # GAACGGUG 518 101 3.5e-073 3.1e-068 # GCACGGUG 268 71 2.6e-029 2.2e-024 letter-probability matrix: alength= 4 w= 8 nsites= 2702 E= 1.1e-098 0.000000 0.000000 1.000000 0.000000 0.899334 0.100666 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF UAGGCCAH DREME-10 # Word Pos Neg P-value E-value # BEST UAGGCCAH 789 171 6.5e-106 5.7e-101 # UAGGCCAU 317 41 3.6e-056 3.2e-051 # UAGGCCAC 324 61 2.0e-046 1.8e-041 # UAGGCCAA 184 75 2.4e-012 2.1e-007 letter-probability matrix: alength= 4 w= 8 nsites= 2926 E= 5.7e-101 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.065277 0.146958 0.000000 0.787765 # Stopping reason: maximum running time reached # Running time: 1799.37 seconds