# DREME 5.3.0 # command: dreme -oc T4-Cm.m6A -rna -p T4-Cm.m6A.fa -t 1800 -e 0.05 -png -norc -mink 5 # positives: 2523 from T4-Cm.m6A.fa (Fri Sep 24 16:22:27 CST 2021) # negatives: 2523 from shuffled positives # host: ecs-f11d # when: Fri Sep 24 16:22:33 CST 2021 MEME version 5.3.0 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.290 C 0.212 G 0.211 U 0.288 MOTIF GARGAAGM DREME-1 # Word Pos Neg P-value E-value # BEST GARGAAGM 400 127 8.6e-038 7.6e-033 # GAAGAAGA 217 50 1.5e-027 1.4e-022 # GAGGAAGA 129 35 1.5e-014 1.3e-009 # GAAGAAGC 98 31 8.6e-010 7.6e-005 # GAGGAAGC 53 22 2.0e-004 1.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 533 E= 7.6e-033 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.624765 0.000000 0.375235 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.733583 0.266417 0.000000 0.000000 MOTIF GGHGGHG DREME-2 # Word Pos Neg P-value E-value # BEST GGHGGHG 617 301 2.3e-031 2.0e-026 # GGUGGUG 150 48 3.5e-014 3.1e-009 # GGUGGAG 142 44 5.8e-014 5.2e-009 # GGAGGAG 202 86 7.8e-013 6.9e-008 # GGCGGCG 103 27 3.3e-012 2.9e-007 # GGCGGAG 102 28 1.3e-011 1.1e-006 # GGCGGUG 93 32 1.5e-008 1.3e-003 # GGUGGCG 77 30 2.5e-006 2.2e-001 # GGAGGCG 73 31 1.9e-005 1.7e+000 # GGAGGUG 86 47 3.9e-004 3.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1092 E= 2.0e-026 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.346154 0.293956 0.000000 0.359890 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.414835 0.240842 0.000000 0.344322 0.000000 0.000000 1.000000 0.000000 MOTIF CYUCYUC DREME-3 # Word Pos Neg P-value E-value # BEST CYUCYUC 725 399 1.0e-028 8.8e-024 # CUUCUUC 380 169 3.9e-022 3.5e-017 # CUUCCUC 233 103 8.5e-014 7.5e-009 # CCUCCUC 180 74 3.5e-012 3.1e-007 # CCUCUUC 196 119 4.5e-006 3.9e-001 letter-probability matrix: alength= 4 w= 7 nsites= 1147 E= 8.8e-024 0.000000 1.000000 0.000000 0.000000 0.000000 0.366173 0.000000 0.633827 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.399303 0.000000 0.600697 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCHGCYGC DREME-4 # Word Pos Neg P-value E-value # BEST GCHGCYGC 184 42 1.4e-023 1.2e-018 # GCUGCUGC 76 14 6.1e-012 5.3e-007 # GCCGCCGC 45 5 1.8e-009 1.6e-004 # GCAGCUGC 43 8 3.0e-007 2.7e-002 # GCCGCUGC 22 5 7.4e-004 6.5e+001 # GCAGCCGC 21 5 1.2e-003 1.1e+002 # GCUGCCGC 20 6 4.6e-003 4.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 223 E= 1.2e-018 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.291480 0.278027 0.000000 0.430493 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.372197 0.000000 0.627803 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF UAUAWAUA DREME-5 # Word Pos Neg P-value E-value # BEST UAUAWAUA 199 50 1.6e-023 1.4e-018 # UAUAUAUA 112 23 6.8e-016 6.0e-011 # UAUAAAUA 107 28 1.2e-012 1.0e-007 letter-probability matrix: alength= 4 w= 8 nsites= 281 E= 1.4e-018 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.398577 0.000000 0.000000 0.601423 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGKCGW DREME-6 # Word Pos Neg P-value E-value # BEST CGKCGW 565 304 8.7e-023 7.6e-018 # CGUCGU 215 90 5.7e-014 5.0e-009 # CGUCGA 231 122 9.6e-010 8.4e-005 # CGGCGA 178 91 2.8e-008 2.4e-003 # CGGCGU 110 65 3.4e-004 2.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 850 E= 7.6e-018 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.395294 0.604706 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.557647 0.000000 0.000000 0.442353 MOTIF BKUUGUU DREME-7 # Word Pos Neg P-value E-value # BEST BKUUGUU 867 579 1.7e-019 1.4e-014 # UUUUGUU 358 227 4.8e-009 4.2e-004 # UGUUGUU 206 113 4.2e-008 3.7e-003 # CUUUGUU 235 145 9.3e-007 8.1e-002 # GUUUGUU 186 118 3.5e-005 3.0e+000 # CGUUGUU 87 48 4.3e-004 3.7e+001 # GGUUGUU 96 63 4.9e-003 4.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1235 E= 1.4e-014 0.000000 0.280972 0.241296 0.477733 0.000000 0.000000 0.309312 0.690688 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CWCCACCR DREME-8 # Word Pos Neg P-value E-value # BEST CWCCACCR 154 38 1.2e-018 1.0e-013 # CACCACCA 85 17 1.5e-012 1.3e-007 # CACCACCG 39 4 1.4e-008 1.2e-003 # CUCCACCA 47 11 8.9e-007 7.8e-002 # CUCCACCG 25 10 8.2e-003 7.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 263 E= 1.0e-013 0.000000 1.000000 0.000000 0.000000 0.555133 0.000000 0.000000 0.444867 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.760456 0.000000 0.239544 0.000000 MOTIF SAAGAAV DREME-9 # Word Pos Neg P-value E-value # BEST SAAGAAV 970 689 2.1e-017 1.9e-012 # CAAGAAC 195 101 9.8e-009 8.6e-004 # GAAGAAA 344 218 9.9e-009 8.6e-004 # GAAGAAG 141 68 1.4e-007 1.2e-002 # CAAGAAG 229 149 1.1e-005 9.8e-001 # GAAGAAC 192 123 3.6e-005 3.1e+000 # CAAGAAA 257 205 6.4e-003 5.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1537 E= 1.9e-012 0.000000 0.499675 0.500325 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.461288 0.273260 0.265452 0.000000 MOTIF GHAGCW DREME-10 # Word Pos Neg P-value E-value # BEST GHAGCW 1278 999 1.7e-015 1.5e-010 # GAAGCU 438 296 8.3e-009 7.2e-004 # GAAGCA 458 315 1.3e-008 1.2e-003 # GCAGCA 370 247 7.3e-008 6.4e-003 # GUAGCA 209 152 1.1e-003 9.5e+001 # GCAGCU 280 225 5.6e-003 4.9e+002 # GUAGCU 197 152 7.3e-003 6.3e+002 letter-probability matrix: alength= 4 w= 6 nsites= 2263 E= 1.5e-010 0.000000 0.000000 1.000000 0.000000 0.489616 0.313301 0.000000 0.197084 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.530270 0.000000 0.000000 0.469730 MOTIF KUUCUU DREME-11 # Word Pos Neg P-value E-value # BEST KUUCUU 1206 940 2.1e-014 1.8e-009 # UUUCUU 903 705 1.3e-009 1.1e-004 # GUUCUU 571 420 5.1e-008 4.4e-003 letter-probability matrix: alength= 4 w= 6 nsites= 2108 E= 1.8e-009 0.000000 0.000000 0.345825 0.654175 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CKCCGCCR DREME-12 # Word Pos Neg P-value E-value # BEST CKCCGCCR 100 20 1.4e-014 1.2e-009 # CUCCGCCG 40 3 1.3e-009 1.1e-004 # CGCCGCCG 29 3 1.2e-006 1.0e-001 # CGCCGCCA 21 2 3.2e-005 2.8e+000 # CUCCGCCA 32 12 1.8e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 123 E= 1.2e-009 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.357724 0.642276 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.439024 0.000000 0.560976 0.000000 MOTIF GAMGAYG DREME-13 # Word Pos Neg P-value E-value # BEST GAMGAYG 404 227 2.5e-014 2.1e-009 # GAAGAUG 213 120 7.7e-008 6.7e-003 # GACGACG 78 29 9.2e-007 8.0e-002 # GAAGACG 92 43 1.2e-005 1.0e+000 # GACGAUG 96 53 2.2e-004 1.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 515 E= 2.1e-009 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.644660 0.355340 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.365049 0.000000 0.634951 0.000000 0.000000 1.000000 0.000000 MOTIF CAMCAM DREME-14 # Word Pos Neg P-value E-value # BEST CAMCAM 1095 822 1.4e-015 1.2e-010 # CAACAA 568 411 1.3e-008 1.1e-003 # CACCAA 381 283 2.6e-005 2.3e+000 # CAACAC 304 222 9.3e-005 8.0e+000 # CACCAC 229 175 3.0e-003 2.5e+002 letter-probability matrix: alength= 4 w= 6 nsites= 1758 E= 1.2e-010 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.594994 0.405006 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.655290 0.344710 0.000000 0.000000 MOTIF GCUGCU DREME-15 # Word Pos Neg P-value E-value # BEST GCUGCU 329 179 1.1e-012 9.8e-008 # GCUGCU 329 179 1.1e-012 9.8e-008 letter-probability matrix: alength= 4 w= 6 nsites= 372 E= 9.8e-008 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF HAUAUAU DREME-16 # Word Pos Neg P-value E-value # BEST HAUAUAU 359 210 1.8e-011 1.5e-006 # UAUAUAU 124 56 1.4e-007 1.2e-002 # CAUAUAU 132 71 7.5e-006 6.5e-001 # AAUAUAU 176 115 1.4e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 447 E= 1.5e-006 0.445190 0.308725 0.000000 0.246085 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF HCGAGUU DREME-17 # Word Pos Neg P-value E-value # BEST HCGAGUU 236 117 2.5e-011 2.2e-006 # UCGAGUU 103 45 7.4e-007 6.4e-002 # CCGAGUU 70 34 2.3e-004 2.0e+001 # ACGAGUU 70 38 1.2e-003 1.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 254 E= 2.2e-006 0.279528 0.283465 0.000000 0.437008 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GCCAUVG DREME-18 # Word Pos Neg P-value E-value # BEST GCCAUVG 215 106 1.6e-010 1.4e-005 # GCCAUGG 92 46 4.5e-005 3.8e+000 # GCCAUCG 76 35 5.2e-005 4.5e+000 # GCCAUAG 56 28 1.4e-003 1.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 226 E= 1.4e-005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.252212 0.336283 0.411504 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GUUGHAG DREME-19 # Word Pos Neg P-value E-value # BEST GUUGHAG 278 154 2.4e-010 2.0e-005 # GUUGUAG 72 33 7.6e-005 6.5e+000 # GUUGCAG 91 48 1.4e-004 1.2e+001 # GUUGAAG 133 81 1.7e-004 1.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 310 E= 2.0e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.448387 0.312903 0.000000 0.238710 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF UCYYUCUC DREME-20 # Word Pos Neg P-value E-value # BEST UCYYUCUC 253 136 3.5e-010 3.0e-005 # UCUCUCUC 108 42 2.2e-008 1.9e-003 # UCCCUCUC 43 20 2.4e-003 2.1e+002 # UCCUUCUC 75 44 2.6e-003 2.2e+002 # UCUUUCUC 69 41 4.5e-003 3.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 328 E= 3.0e-005 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.371951 0.000000 0.628049 0.000000 0.554878 0.000000 0.445122 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGARAGAG DREME-21 # Word Pos Neg P-value E-value # BEST AGARAGAG 172 78 5.3e-010 4.5e-005 # AGAGAGAG 109 42 1.5e-008 1.3e-003 # AGAAAGAG 76 38 2.0e-004 1.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 227 E= 4.5e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.325991 0.000000 0.674009 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CGGYGG DREME-22 # Word Pos Neg P-value E-value # BEST CGGYGG 254 143 3.6e-009 3.1e-004 # CGGCGG 130 65 1.2e-006 1.0e-001 # CGGUGG 150 88 2.3e-005 2.0e+000 letter-probability matrix: alength= 4 w= 6 nsites= 350 E= 3.1e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.471429 0.000000 0.528571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAACCCUA DREME-23 # Word Pos Neg P-value E-value # BEST AAACCCUA 59 12 5.4e-009 4.6e-004 # AAACCCUA 59 12 5.4e-009 4.6e-004 letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 4.6e-004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF UWAUUUAU DREME-24 # Word Pos Neg P-value E-value # BEST UWAUUUAU 178 89 1.2e-008 1.0e-003 # UUAUUUAU 120 58 1.3e-006 1.1e-001 # UAAUUUAU 63 37 5.6e-003 4.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 196 E= 1.0e-003 0.000000 0.000000 0.000000 1.000000 0.336735 0.000000 0.000000 0.663265 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AUGGY DREME-25 # Word Pos Neg P-value E-value # BEST AUGGY 1380 1181 1.2e-008 1.0e-003 # AUGGC 831 689 7.5e-006 6.4e-001 # AUGGU 921 802 2.3e-004 2.0e+001 letter-probability matrix: alength= 4 w= 5 nsites= 2524 E= 1.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.459588 0.000000 0.540412 MOTIF AUSGAAC DREME-26 # Word Pos Neg P-value E-value # BEST AUSGAAC 215 117 1.5e-008 1.3e-003 # AUCGAAC 112 61 4.9e-005 4.2e+000 # AUGGAAC 107 60 1.4e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 231 E= 1.3e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.515152 0.484848 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAAABAAA DREME-27 # Word Pos Neg P-value E-value # BEST AAAABAAA 408 273 1.5e-008 1.3e-003 # AAAAUAAA 154 92 3.1e-005 2.6e+000 # AAAAGAAA 182 130 1.4e-003 1.2e+002 # AAAACAAA 116 75 1.5e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 502 E= 1.3e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.252988 0.410359 0.336653 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGDCUUC DREME-28 # Word Pos Neg P-value E-value # BEST CGDCUUC 213 117 2.6e-008 2.2e-003 # CGUCUUC 89 46 1.1e-004 9.4e+000 # CGACUUC 81 42 2.4e-004 2.0e+001 # CGGCUUC 55 31 6.0e-003 5.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 236 E= 2.2e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.355932 0.000000 0.254237 0.389831 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF UGUGGCUS DREME-29 # Word Pos Neg P-value E-value # BEST UGUGGCUS 62 16 6.1e-008 5.2e-003 # UGUGGCUG 36 10 7.3e-005 6.2e+000 # UGUGGCUC 26 6 2.6e-004 2.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 5.2e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.412698 0.587302 0.000000 MOTIF CYACCGC DREME-30 # Word Pos Neg P-value E-value # BEST CYACCGC 91 33 6.6e-008 5.6e-003 # CCACCGC 68 26 7.2e-006 6.1e-001 # CUACCGC 26 8 1.4e-003 1.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 102 E= 5.6e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.745098 0.000000 0.254902 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AUUAUUAY DREME-31 # Word Pos Neg P-value E-value # BEST AUUAUUAY 114 48 7.2e-008 6.1e-003 # AUUAUUAU 86 37 4.6e-006 3.9e-001 # AUUAUUAC 33 12 1.2e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 128 E= 6.1e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.242188 0.000000 0.757812 MOTIF AAUAAUAA DREME-32 # Word Pos Neg P-value E-value # BEST AAUAAUAA 120 53 1.2e-007 1.0e-002 # AAUAAUAA 120 53 1.2e-007 1.0e-002 letter-probability matrix: alength= 4 w= 8 nsites= 130 E= 1.0e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGAAGGVA DREME-33 # Word Pos Neg P-value E-value # BEST AGAAGGVA 151 75 1.3e-007 1.1e-002 # AGAAGGGA 59 27 3.3e-004 2.8e+001 # AGAAGGAA 63 34 1.9e-003 1.6e+002 # AGAAGGCA 32 15 9.0e-003 7.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 158 E= 1.1e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.405063 0.208861 0.386076 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGDCGCCG DREME-34 # Word Pos Neg P-value E-value # BEST CGDCGCCG 62 17 1.5e-007 1.2e-002 # CGUCGCCG 25 4 5.0e-005 4.2e+000 # CGACGCCG 20 4 7.5e-004 6.4e+001 # CGGCGCCG 24 9 6.6e-003 5.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 1.2e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.281690 0.000000 0.338028 0.380282 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CUCCUUYC DREME-35 # Word Pos Neg P-value E-value # BEST CUCCUUYC 89 33 1.5e-007 1.2e-002 # CUCCUUUC 42 11 1.0e-005 8.7e-001 # CUCCUUCC 49 22 8.5e-004 7.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 1.2e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.515464 0.000000 0.484536 0.000000 1.000000 0.000000 0.000000 MOTIF ARCUWC DREME-36 # Word Pos Neg P-value E-value # BEST ARCUWC 932 762 2.3e-007 2.0e-002 # AACUAC 239 166 9.2e-005 7.8e+000 # AGCUUC 378 291 1.8e-004 1.5e+001 # AGCUAC 143 99 2.3e-003 1.9e+002 # AACUUC 404 343 8.7e-003 7.3e+002 letter-probability matrix: alength= 4 w= 6 nsites= 1362 E= 2.0e-002 1.000000 0.000000 0.000000 0.000000 0.560940 0.000000 0.439060 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.302496 0.000000 0.000000 0.697504 0.000000 1.000000 0.000000 0.000000 MOTIF CCSAACCC DREME-37 # Word Pos Neg P-value E-value # BEST CCSAACCC 54 14 4.7e-007 4.0e-002 # CCCAACCC 35 8 2.0e-005 1.6e+000 # CCGAACCC 19 6 7.2e-003 6.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 4.0e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.648148 0.351852 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAAGAGV DREME-38 # Word Pos Neg P-value E-value # BEST GAAGAGV 410 289 4.8e-007 4.0e-002 # GAAGAGC 117 67 1.1e-004 9.1e+000 # GAAGAGG 154 109 2.6e-003 2.2e+002 # GAAGAGA 193 145 4.0e-003 3.4e+002 letter-probability matrix: alength= 4 w= 7 nsites= 521 E= 4.0e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.431862 0.241843 0.326296 0.000000 MOTIF CAKCCUC DREME-39 # Word Pos Neg P-value E-value # BEST CAKCCUC 186 105 5.9e-007 5.0e-002 # CAGCCUC 84 42 9.6e-005 8.1e+000 # CAUCCUC 111 67 4.9e-004 4.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 215 E= 5.0e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.404651 0.595349 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 1349.47 seconds