# DREME 5.3.0 # command: dreme -oc T2-Cm.m5C -rna -p T2-Cm.m5C.fa -t 1800 -e 0.05 -png -norc -mink 5 # positives: 14292 from T2-Cm.m5C.fa (Fri Sep 24 16:22:27 CST 2021) # negatives: 14292 from shuffled positives # host: ecs-f11d # when: Fri Sep 24 16:23:36 CST 2021 MEME version 5.3.0 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.287 C 0.214 G 0.212 U 0.288 MOTIF GGUYGASG DREME-1 # Word Pos Neg P-value E-value # BEST GGUYGASG 761 216 2.2e-074 1.9e-069 # GGUCGACG 238 33 4.3e-040 3.8e-035 # GGUUGAGG 302 82 2.3e-031 2.0e-026 # GGUUGACG 143 46 3.8e-013 3.3e-008 # GGUCGAGG 102 56 1.5e-004 1.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1370 E= 1.9e-069 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.554745 0.000000 0.445255 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.589051 0.410949 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF USAUACCA DREME-2 # Word Pos Neg P-value E-value # BEST USAUACCA 634 160 1.5e-069 1.3e-064 # UGAUACCA 369 80 2.3e-046 2.1e-041 # UCAUACCA 276 80 5.9e-027 5.1e-022 letter-probability matrix: alength= 4 w= 8 nsites= 914 E= 1.3e-064 0.000000 0.000000 0.000000 1.000000 0.000000 0.562363 0.437637 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AASCCUAA DREME-3 # Word Pos Neg P-value E-value # BEST AASCCUAA 693 207 4.6e-064 4.0e-059 # AACCCUAA 420 105 1.1e-046 9.8e-042 # AAGCCUAA 278 103 3.1e-020 2.8e-015 letter-probability matrix: alength= 4 w= 8 nsites= 1973 E= 4.0e-059 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.683730 0.316270 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF UUAGGSUU DREME-4 # Word Pos Neg P-value E-value # BEST UUAGGSUU 707 222 1.0e-061 8.9e-057 # UUAGGGUU 415 122 2.6e-039 2.3e-034 # UUAGGCUU 298 106 8.3e-023 7.3e-018 letter-probability matrix: alength= 4 w= 8 nsites= 1968 E= 8.9e-057 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.379573 0.620427 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GAUAUKGU DREME-5 # Word Pos Neg P-value E-value # BEST GAUAUKGU 570 156 7.5e-058 6.6e-053 # GAUAUUGU 364 85 4.5e-043 3.9e-038 # GAUAUGGU 210 71 1.4e-017 1.3e-012 letter-probability matrix: alength= 4 w= 8 nsites= 814 E= 6.6e-053 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.466830 0.533170 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF BCUUCYUC DREME-6 # Word Pos Neg P-value E-value # BEST BCUUCYUC 1888 1102 8.1e-053 7.1e-048 # UCUUCUUC 733 335 2.7e-036 2.4e-031 # UCUUCCUC 533 244 1.5e-026 1.4e-021 # CCUUCUUC 471 231 1.5e-020 1.3e-015 # GCUUCUUC 258 150 4.0e-008 3.6e-003 # CCUUCCUC 259 176 3.6e-005 3.1e+000 # GCUUCCUC 174 122 1.4e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 2600 E= 7.1e-048 0.000000 0.309615 0.175769 0.514615 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.373846 0.000000 0.626154 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACCCUUAY DREME-7 # Word Pos Neg P-value E-value # BEST ACCCUUAY 466 117 1.7e-051 1.5e-046 # ACCCUUAU 299 65 1.1e-037 9.2e-033 # ACCCUUAC 174 55 5.4e-016 4.8e-011 letter-probability matrix: alength= 4 w= 8 nsites= 674 E= 1.5e-046 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.511869 0.000000 0.488131 MOTIF CGACCSUG DREME-8 # Word Pos Neg P-value E-value # BEST CGACCSUG 384 77 4.1e-051 3.6e-046 # CGACCGUG 229 31 4.3e-039 3.8e-034 # CGACCCUG 158 46 5.7e-016 5.0e-011 letter-probability matrix: alength= 4 w= 8 nsites= 907 E= 3.6e-046 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.360529 0.639471 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GARGAMGA DREME-9 # Word Pos Neg P-value E-value # BEST GARGAMGA 1394 745 4.8e-049 4.2e-044 # GAAGAAGA 717 338 2.1e-033 1.8e-028 # GAGGAAGA 533 245 2.5e-026 2.2e-021 # GAAGACGA 242 127 8.7e-010 7.6e-005 # GAGGACGA 181 89 9.7e-009 8.5e-004 letter-probability matrix: alength= 4 w= 8 nsites= 1864 E= 4.2e-044 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.547747 0.000000 0.452253 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.773069 0.226931 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF UCGAKCU DREME-10 # Word Pos Neg P-value E-value # BEST UCGAKCU 1169 613 6.4e-043 5.6e-038 # UCGAUCU 733 397 6.4e-025 5.6e-020 # UCGAGCU 469 225 2.0e-021 1.7e-016 letter-probability matrix: alength= 4 w= 7 nsites= 1476 E= 5.6e-038 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.343496 0.656504 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 # Stopping reason: maximum running time reached # Running time: 1799.94 seconds