# DREME 5.3.0
#     command: dreme -oc C4-Cm.m6A -rna -p C4-Cm.m6A.fa -t 1800 -e 0.05 -png -norc -mink 5
#   positives: 16061 from C4-Cm.m6A.fa (Fri Sep 24 16:22:27 CST 2021)
#   negatives: 16061 from shuffled positives
#        host: ecs-f11d
#        when: Fri Sep 24 16:22:59 CST 2021

MEME version 5.3.0

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.281 C 0.219 G 0.219 U 0.281


MOTIF GGCGGHG DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST     GGCGGHG       2863        715   2.2e-337   2.1e-332
#          GGCGGCG       1052        183   3.4e-154   3.1e-149
#          GGCGGAG       1121        331   3.5e-105   3.2e-100
#          GGCGGUG        879        211   9.2e-101   8.5e-096

letter-probability matrix: alength= 4 w= 7 nsites= 3715 E= 2.1e-332
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.343203 0.382503 0.000000 0.274293
0.000000 0.000000 1.000000 0.000000


MOTIF CWUCYUC DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST     CWUCYUC       6916       3716   8.8e-319   8.1e-314
#          CUUCUUC       3144       1258   1.5e-211   1.4e-206
#          CUUCCUC       2187       1020   7.1e-107   6.5e-102
#          CAUCUUC       1862       1008   1.2e-063   1.1e-058
#          CAUCCUC       1170        801   4.8e-018   4.4e-013

letter-probability matrix: alength= 4 w= 7 nsites= 10387 E= 8.1e-314
0.000000 1.000000 0.000000 0.000000
0.343699 0.000000 0.000000 0.656301
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.358429 0.000000 0.641571
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CKCCRCC DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST     CKCCRCC       3540       1192   9.8e-311   9.0e-306
#          CGCCGCC       1040        165   3.0e-161   2.7e-156
#          CUCCGCC       1026        354   1.6e-079   1.5e-074
#          CUCCACC       1153        490   4.5e-065   4.1e-060
#          CGCCACC        653        216   2.4e-053   2.2e-048

letter-probability matrix: alength= 4 w= 7 nsites= 4964 E= 9.0e-306
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.385576 0.614424
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.480661 0.000000 0.519339 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GAVGAAGA DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST    GAVGAAGA       3245       1052   7.7e-295   7.1e-290
#         GAAGAAGA       1826        527   2.2e-179   2.0e-174
#         GAGGAAGA       1196        395   1.9e-098   1.7e-093
#         GACGAAGA        438        152   6.1e-034   5.6e-029

letter-probability matrix: alength= 4 w= 8 nsites= 4124 E= 7.1e-290
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.552861 0.109360 0.337779 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GARGAHG DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST     GARGAHG       5918       3640   1.8e-171   1.6e-166
#          GAAGAAG       1732        829   7.3e-079   6.7e-074
#          GAAGAUG       1623        931   6.8e-047   6.2e-042
#          GAGGAAG       1212        672   2.8e-038   2.6e-033
#          GAAGACG        747        424   2.6e-022   2.3e-017
#          GAGGAUG       1204        796   2.1e-021   1.9e-016
#          GAGGACG        550        381   1.1e-008   9.7e-004

letter-probability matrix: alength= 4 w= 7 nsites= 8077 E= 1.6e-166
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.586975 0.000000 0.413025 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.422558 0.173084 0.000000 0.404358
0.000000 0.000000 1.000000 0.000000


MOTIF GCWGCHG DREME-6

#             Word        Pos        Neg    P-value    E-value
# BEST     GCWGCHG       3657       1820   2.5e-166   2.3e-161
#          GCUGCUG       1262        427   7.1e-101   6.4e-096
#          GCAGCAG       1106        404   2.5e-079   2.3e-074
#          GCAGCUG        807        418   2.2e-030   2.0e-025
#          GCUGCAG        814        427   9.8e-030   9.0e-025
#          GCUGCCG        434        202   4.2e-021   3.8e-016
#          GCAGCCG        372        207   2.2e-012   2.0e-007

letter-probability matrix: alength= 4 w= 7 nsites= 5140 E= 2.3e-161
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.465370 0.000000 0.000000 0.534630
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.405642 0.153502 0.000000 0.440856
0.000000 0.000000 1.000000 0.000000


# Stopping reason: maximum running time reached
#    Running time: 1799.83 seconds