# DREME 5.3.0
#     command: dreme -oc C2-Cm.m5C -rna -p C2-Cm.m5C.fa -t 1800 -e 0.05 -png -norc -mink 5
#   positives: 7270 from C2-Cm.m5C.fa (Fri Sep 24 16:22:27 CST 2021)
#   negatives: 7270 from shuffled positives
#        host: ecs-f11d
#        when: Fri Sep 24 16:26:39 CST 2021

MEME version 5.3.0

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.293 C 0.209 G 0.207 U 0.292


MOTIF GGUYGASG DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST    GGUYGASG       1355        402   3.5e-136   3.1e-131
#         GGUCGACG        447         84   3.8e-063   3.3e-058
#         GGUUGAGG        514        155   3.8e-048   3.4e-043
#         GGUUGACG        352        103   3.7e-034   3.2e-029
#         GGUCGAGG        166         84   9.3e-008   8.3e-003

letter-probability matrix: alength= 4 w= 8 nsites= 2963 E= 3.1e-131
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.550118 0.000000 0.449882
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.611205 0.388795 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CSUCRACC DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST    CSUCRACC       1358        404   4.2e-136   3.7e-131
#         CGUCGACC        452         68   3.6e-073   3.2e-068
#         CCUCAACC        444        128   1.2e-043   1.1e-038
#         CGUCAACC        382        112   6.1e-037   5.4e-032
#         CCUCGACC        217        109   7.4e-010   6.5e-005

letter-probability matrix: alength= 4 w= 8 nsites= 3016 E= 3.7e-131
0.000000 1.000000 0.000000 0.000000
0.000000 0.375663 0.624337 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.437003 0.000000 0.562997 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF USAUACCA DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST    USAUACCA       1060        265   1.8e-123   1.6e-118
#         UGAUACCA        589        128   4.1e-075   3.6e-070
#         UCAUACCA        495        141   2.8e-049   2.4e-044

letter-probability matrix: alength= 4 w= 8 nsites= 1819 E= 1.6e-118
0.000000 0.000000 0.000000 1.000000
0.000000 0.609676 0.390324 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AUAUAUAU DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST    AUAUAUAU        916        204   1.3e-116   1.1e-111
#         AUAUAUAU        916        204   1.3e-116   1.1e-111

letter-probability matrix: alength= 4 w= 8 nsites= 1414 E= 1.1e-111
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF UGGUAUSA DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST    UGGUAUSA       1064        301   6.3e-110   5.5e-105
#         UGGUAUGA        554        144   1.8e-060   1.6e-055
#         UGGUAUCA        551        166   1.1e-051   9.4e-047

letter-probability matrix: alength= 4 w= 8 nsites= 1755 E= 5.5e-105
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.386325 0.613675 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: maximum running time reached
#    Running time: 1799.02 seconds